Basic Information
Locus ID:
Zma_g27717
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
PPR repeat family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr18 | 1233858 | 1235393 | + | Zma_g27717 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.01 | 55,612.52 Da | 52.78 | 95.48 | 0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 88 | 118 | 2.1E-4 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 367 | 391 | 0.02 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 266 | 285 | 0.097 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 292 | 339 | 1.5E-8 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 190 | 237 | 2.2E-9 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 18 | 150 | 2.2E-15 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 186 | 254 | 1.5E-7 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 291 | 479 | 6.2E-26 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 329 | 356 | 0.0017 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 193 | 226 | 8.0E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 88 | 121 | 5.5E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 294 | 326 | 1.1E-6 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 86 | 120 | 11.016164 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 191 | 225 | 10.007725 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 292 | 326 | 11.871145 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23330.2 | - | 0 |
| RefSeq | XP_025808683.1 | putative pentatricopeptide repeat-containing protein At1g68930 [Panicum hallii] | 0 |
| Q5G1T1 | Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=EMB2261 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2S3H873 | DYW_deaminase domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_3G122700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 1 | COCNU_12G001960 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.2086.V1.1, AsparagusV1_05.1757.V1.1 |
| Poaceae | Echinochloa crus-galli | 2 | AH04.1818, CH04.2086 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_5AG0404360 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0023140.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_009601, gene-QYE76_048342 |
| Poaceae | Oryza coarctata | 1 | Oco10G002650 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g06150.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G055000 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr18G000790 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G205800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG017020, gene_TRIDC1BG017900 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G094800.1.cds1, TraesCS1B02G122700.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb030480_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-18170 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g27717 |