Basic Information
Locus ID:
Zma_g27553
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr18 | 232072 | 233145 | + | Zma_g27553 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.62 | 37,821.46 Da | 78.54 | 55.38 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 206 | 247 | 1.22551E-24 | - |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 272 | 356 | 2.5E-38 | IPR010543 |
| Pfam | PF13639 | Ring finger domain | 205 | 247 | 4.3E-11 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 9 | 50 | 7.9E-16 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 186 | 253 | 1.19E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 172 | 253 | 3.0E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 206 | 246 | 9.9E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 206 | 247 | 12.120453 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 174 | 193 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G59550.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_039836280.1 | E3 ubiquitin-protein ligase RDUF2-like [Panicum virgatum] | 0 |
| Q940T5 | E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9U3U4 | RING-type E3 ubiquitin transferase (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_34423 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology