halophFGD

Basic Information

Locus ID: Zma_g27306

Species & Taxonomic ID: Zoysia macrostachya & 121788

Genome Assembly: GCA_049640385.1

Short Name: FPS1

Description: Belongs to the FPP GGPP synthase family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Zma_chr17	12653790	12656305	-	Zma_g27306

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.09	40,171.51 Da	45.02	92.74	-0.23

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00685	Trans_IPPS_HT	38	348	2.42393E-78	IPR000092
Pfam	PF00348	Polyprenyl synthetase	40	304	8.4E-87	IPR000092
SUPERFAMILY	SSF48576	Terpenoid synthases	23	349	1.8E-88	IPR008949
Gene3D	G3DSA:1.10.600.10	Farnesyl Diphosphate Synthase	8	349	2.6E-129	IPR008949
ProSitePatterns	PS00723	Polyprenyl synthases signature 1.	98	112	-	IPR033749
ProSitePatterns	PS00444	Polyprenyl synthases signature 2.	232	244	-	IPR033749
SFLD	SFLDS00005	Isoprenoid Synthase Type I	39	348	0.0	-
SFLD	SFLDG01017	Polyprenyl Transferase Like	39	348	0.0	-

Gene Ontology

Biological Process:

GO:0008299 (isoprenoid biosynthetic process)

KEGG Pathway

KO Term:

K00787 (farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10])

Pathway:

ko00900 (Terpenoid backbone biosynthesis) map00900 (Terpenoid backbone biosynthesis) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites)

Module:

M00366 (C10-C20 isoprenoid biosynthesis, plants) M00367 (C10-C20 isoprenoid biosynthesis, non-plant eukaryotes)

Reaction:

R01658 (Dimethylallyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + Geranyl diphosphate) R02003 (Geranyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + trans,trans-Farnesyl diphosphate)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G47770.1	farnesyl diphosphate synthase 1. Encodes a protein with farnesyl diphosphate synthase activity.
RefSeq	XP_002441458.1	farnesyl pyrophosphate synthase [Sorghum bicolor]
Swiss-Prot	P49353	Farnesyl pyrophosphate synthase OS=Zea mays OX=4577 GN=FPS PE=2 SV=1
TrEMBL	A0A5J9SNZ9	Farnesyl pyrophosphate synthase OS=Eragrostis curvula OX=38414 GN=EJB05_36610 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg21765, jg24630
Aizoaceae	Mesembryanthemum crystallinum	2	gene_12122, gene_3
Amaranthaceae	Atriplex hortensis	4	Ah009100, Ah017240, Ah017906, Ah017907
Amaranthaceae	Beta vulgaris	2	BVRB_4g090750, BVRB_8g184270
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg18552, Sbi_jg36957
Amaranthaceae	Salicornia europaea	1	Seu_jg4823
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00017305
Amaranthaceae	Suaeda glauca	4	Sgl23593, Sgl28793, Sgl28801, Sgl46569
Amaranthaceae	Chenopodium album	10	gene:ENSEOMG00000010089, gene:ENSEOMG00000010644 ... gene:ENSEOMG00000010995, gene:ENSEOMG00000031350, gene:ENSEOMG00000032827, gene:ENSEOMG00000033494, gene:ENSEOMG00000042864, gene:ENSEOMG00000044304, gene:ENSEOMG00000047544, gene:ENSEOMG00000053071
Amaranthaceae	Chenopodium quinoa	8	CQ.Regalona.r1.2AG0007380, CQ.Regalona.r1.2BG0000590 ... CQ.Regalona.r1.2BG0000640, CQ.Regalona.r1.4BG0026290, CQ.Regalona.r1.8BG0000090, CQ.Regalona.r1.8BG0004440, CQ.Regalona.r1.8BG0004450, CQ.Regalona.r1.9AG0007230
Anacardiaceae	Pistacia vera	2	pistato.v30151850, pistato.v30152140
Apiaceae	Apium graveolens	1	Ag2G01718
Arecaceae	Cocos nucifera	2	COCNU_06G008660, COCNU_14G005730
Arecaceae	Phoenix dactylifera	2	gene-LOC103708154, gene-LOC103709296
Asparagaceae	Asparagus officinalis	4	AsparagusV1_02.1354.V1.1, AsparagusV1_02.1627.V1.1 ... AsparagusV1_05.1293.V1.1, AsparagusV1_07.2685.V1.1
Asteraceae	Flaveria trinervia	6	Ftri15G04615, Ftri15G21532, Ftri15G27378, Ftri16G07414 ... Ftri2G23689, Ftri3G12462
Brassicaceae	Arabidopsis thaliana	2	AT4G17190.1, AT5G47770.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10000912m.g.v1.0, Thhalv10025643m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp2g12470.v2.2, Sp7g17010.v2.2
Brassicaceae	Brassica nigra	2	BniB02g064330.2N, BniB04g010020.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq01G1516, Ceq02G1421
Casuarinaceae	Casuarina glauca	2	Cgl01G1678, Cgl02G1466
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno02g05960
Dunaliellaceae	Dunaliella salina	1	Dusal.1212s00002.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate07g00260
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-9021
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG05.2072, evm.TU.LG12.1291
Plantaginaceae	Plantago ovata	1	Pov_00039157
Plumbaginaceae	Limonium bicolor	16	Lb0G37119, Lb0G37120, Lb1G01399, Lb2G14145, Lb3G15725 ... Lb3G15726, Lb3G17824, Lb3G17825, Lb3G17827, Lb4G24633, Lb4G25298, Lb4G25299, Lb5G29348, Lb5G29349, Lb5G29350, Lb6G31725
Poaceae	Echinochloa crus-galli	13	AH02.2849, AH02.2888, AH05.1560, AH09.2567, AH09.2568 ... BH02.2970, BH05.1710, BH09.2792, BH09.2793, BH09.2794, CH02.3562, CH04.2171, CH09.2989
Poaceae	Eleusine coracana subsp. coracana	7	gene-QOZ80_1AG0030170, gene-QOZ80_1BG0080220 ... gene-QOZ80_4AG0301000, gene-QOZ80_4AG0301010, gene-QOZ80_4BG0331740, gene-QOZ80_5AG0364640, gene-QOZ80_5BG0412610
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.1HG0079800.1, HORVU.MOREX.r3.2HG0202590.1 ... HORVU.MOREX.r3.3HG0283300.1
Poaceae	Lolium multiflorum	5	gene-QYE76_016239, gene-QYE76_047038, gene-QYE76_047040 ... gene-QYE76_054719, gene-QYE76_054792
Poaceae	Oryza coarctata	9	Oco01G018030, Oco01G018300, Oco02G018190, Oco02G018540 ... Oco07G017930, Oco08G017300, Oco08G017310, Oco09G015720, Oco10G015590
Poaceae	Oryza sativa	5	LOC_Os01g50050.1, LOC_Os01g50760.1, LOC_Os04g56210.1 ... LOC_Os04g56230.1, LOC_Os05g46580.1
Poaceae	Paspalum vaginatum	5	gene-BS78_03G242500, gene-BS78_03G247700 ... gene-BS78_06G265800, gene-BS78_06G265900, gene-BS78_09G220800
Poaceae	Puccinellia tenuiflora	7	Pt_Chr0300549, Pt_Chr0300570, Pt_Chr0307281, Pt_Chr0503835 ... Pt_Chr0503836, Pt_Chr0503853, Pt_Chr0602579
Poaceae	Sporobolus alterniflorus	8	Chr01G014950, Chr02G011820, Chr05G021850, Chr18G015010 ... Chr22G002370, Chr23G002040, Chr25G001610, Chr30G001610
Poaceae	Thinopyrum elongatum	5	Tel1E01G593700, Tel2E01G849200, Tel3E01G427600 ... Tel3E01G432200, Tel3E01G432400
Poaceae	Triticum dicoccoides	8	gene_TRIDC1AG053720, gene_TRIDC1BG061520 ... gene_TRIDC2AG070570, gene_TRIDC2BG076300, gene_TRIDC3AG038130, gene_TRIDC3AG038710, gene_TRIDC3BG042890, gene_TRIDC3BG043770
Poaceae	Triticum aestivum	11	TraesCS1A02G365800.1, TraesCS1B02G383400.1 ... TraesCS1D02G371200.2, TraesCS2A02G501900.1, TraesCS2B02G530100.1, TraesCS2D02G502400.1, TraesCS3A02G254300.1, TraesCS3A02G258600.1, TraesCS3B02G286300.2, TraesCS3D02G255200.1, TraesCS3D02G258500.1
Poaceae	Zea mays	3	Zm00001eb155590_P001, Zm00001eb342550_P002 ... Zm00001eb361070_P001
Poaceae	Zoysia japonica	5	nbis-gene-12673, nbis-gene-13789, nbis-gene-24985 ... nbis-gene-26242, nbis-gene-6074
Poaceae	Zoysia macrostachya	6	Zma_g10970, Zma_g20595, Zma_g22130, Zma_g27306, Zma_g28713 ... Zma_g8490
Portulacaceae	Portulaca oleracea	7	evm.TU.LG02.616, evm.TU.LG09.2062, evm.TU.LG15.1460 ... evm.TU.LG19.642, evm.TU.LG19.644, evm.TU.LG24.108, evm.TU.LG24.109
Posidoniaceae	Posidonia oceanica	2	gene.Posoc02g22310, gene.Posoc02g22320
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_7_RagTag.51, evm.TU.Scaffold_8_RagTag.349
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-19700, nbisL1-mrna-19701, nbisL1-mrna-20058 ... nbisL1-mrna-20234, nbisL1-mrna-9920
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-15503
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-17954, nbisL1-mrna-22351
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000018l.769, evm.TU.utg000028l.29
Rhizophoraceae	Kandelia obovata	2	Maker00003684, Maker00010753
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-3232, nbisL1-mrna-7985
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-11264, nbisL1-mrna-22574
Salicaceae	Populus euphratica	1	populus_peu10476
Solanaceae	Lycium barbarum	2	gene-LOC132627819, gene-LOC132636283
Solanaceae	Solanum chilense	3	SOLCI005895800, SOLCI007039200, SOLCI007039400
Solanaceae	Solanum pennellii	3	gene-LOC107001694, gene-LOC107001695, gene-LOC107007637
Tamaricaceae	Reaumuria soongarica	2	gene_17882, gene_4063
Tamaricaceae	Tamarix chinensis	2	TC05G2572, TC06G0542
Zosteraceae	Zostera marina	2	Zosma01g03700.v3.1, Zosma04g17780.v3.1