Basic Information
Locus ID:
Zma_g2528
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
Ubiquitin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr02 | 1155319 | 1156427 | + | Zma_g2528 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.30 | 33,600.82 Da | 59.87 | 81.26 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 3 | 71 | 3.63371E-15 | - |
| Pfam | PF12776 | Myb/SANT-like DNA-binding domain | 145 | 238 | 1.3E-13 | IPR024752 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 1.1E-15 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 83 | 3.68E-18 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 108 | 8.4E-19 | - |
| SMART | SM00213 | ubq_7 | 1 | 74 | 2.4E-13 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 78 | 17.626394 | IPR000626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 106 | 123 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 127 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 90 | 104 | - | - |
| Coils | Coil | Coil | 193 | 213 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09790.1 | ubiquitin 8. encodes a ubiquitin-like protein that contains tandem repeats of the ubiquitin coding region, but at least one repeat per gene encodes a protein with amino acid substitutions. | 0 |
| RefSeq | XP_051177529.1 | uncharacterized protein LOC127292216 [Lolium perenne] | 0 |
| P16709 | viral Ubiquitin OS=Autographa californica nuclear polyhedrosis virus OX=46015 GN=vUbi PE=1 SV=2 | 0 | |
| TrEMBL | A0A1B6QHB1 | Ubiquitin-like domain-containing protein OS=Sorghum bicolor OX=4558 GN=SORBI_3001G045300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH01.307, BH01.416, CH01.272 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_3BG0256580 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0523990.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_060920, gene-QYE76_060921, gene-QYE76_060922 |
| Poaceae | Oryza coarctata | 2 | Oco05G026740, Oco06G027730 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g53100.1, LOC_Os03g59370.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G040500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0105695 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G734600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG066530, gene_TRIDC5BG071540 |
| Poaceae | Triticum aestivum | 5 | TraesCS5A02G464200.1, TraesCS5B02G475600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb061840_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-16537 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g2528 |