Basic Information
Locus ID:
Zma_g25275
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
Protein DA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr15 | 10042499 | 10046079 | + | Zma_g25275 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.66 | 55,678.12 Da | 57.21 | 68.03 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 122 | 174 | 3.42479E-28 | - |
| Pfam | PF12315 | Protein DA1 | 271 | 487 | 7.0E-99 | IPR022087 |
| Pfam | PF00412 | LIM domain | 122 | 175 | 9.4E-11 | IPR001781 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 148 | 202 | 2.28E-10 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 116 | 147 | 5.95E-8 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 110 | 179 | 4.7E-16 | - |
| SMART | SM00726 | uim | 71 | 90 | 0.051 | IPR003903 |
| SMART | SM00726 | uim | 40 | 59 | 16.0 | IPR003903 |
| SMART | SM00132 | lim_4 | 121 | 173 | 3.4E-15 | IPR001781 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 120 | 180 | 12.4642 | IPR001781 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 71 | 90 | 9.961906 | IPR003903 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 122 | 156 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 41 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 41 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 0 |
| RefSeq | XP_039840055.1 | protein DA1-related 1-like isoform X1 [Panicum virgatum] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A835B9U2 | LIM zinc-binding domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_039846 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology