Basic Information
Locus ID:
Zma_g24920
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
USP8 dimerisation domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr15 | 3353349 | 3360610 | - | Zma_g24920 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.06 | 57,544.54 Da | 43.49 | 81.19 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 338 | 512 | 6.66015E-108 | IPR044098 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 335 | 441 | 2.2E-14 | IPR000555 |
| Pfam | PF08969 | USP8 dimerisation domain | 14 | 97 | 4.9E-11 | IPR015063 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 338 | 468 | 1.31E-18 | - |
| SUPERFAMILY | SSF140856 | USP8 N-terminal domain-like | 15 | 117 | 1.57E-5 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 4 | 143 | 1.2E-27 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 326 | 514 | 3.5E-70 | - |
| SMART | SM00232 | pad1_6 | 337 | 465 | 1.5E-9 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 337 | 468 | 23.791187 | IPR037518 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48790.1 | associated molecule with the SH3 domain of STAM 1. | 0 |
| RefSeq | XP_025816930.1 | AMSH-like ubiquitin thioesterase 3 [Panicum hallii] | 0 |
| Q5PNU3 | AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana OX=3702 GN=AMSH3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9UC77 | MPN domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_30333 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology