Basic Information
Locus ID:
Zma_g24775
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr15 | 1442447 | 1443739 | + | Zma_g24775 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.11 | 44,816.13 Da | 48.99 | 103.84 | 0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 14 | 54 | 1.96263E-21 | - |
| Pfam | PF04564 | U-box domain | 12 | 76 | 1.2E-16 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 8 | 78 | 1.26E-26 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 101 | 408 | 3.05E-5 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 8 | 79 | 2.3E-27 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 85 | 413 | 4.9E-10 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 11 | 74 | 1.4E-31 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 7 | 81 | 34.729984 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_034602614.1 | E3 ubiquitin-protein ligase PUB23-like [Setaria viridis] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U6TZZ0 | RING-type E3 ubiquitin transferase OS=Setaria viridis OX=4556 GN=SEVIR_7G307300v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology