Basic Information
Locus ID:
Zma_g24709
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr15 | 909496 | 910110 | + | Zma_g24709 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.14 | 22,386.42 Da | 50.69 | 69.46 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 121 | 163 | 8.81381E-19 | - |
| Pfam | PF13639 | Ring finger domain | 120 | 163 | 7.8E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 115 | 169 | 3.06E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 98 | 174 | 2.0E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 122 | 162 | 3.9E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 122 | 163 | 12.69582 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 171 | 191 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 170 | 191 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 25 | 45 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21960.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_039802606.1 | RING finger protein 44-like [Panicum virgatum] | 0 |
| Q9H9V4 | RING finger protein 122 OS=Homo sapiens OX=9606 GN=RNF122 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8T0TZN2 | RING-type domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_3NG009800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Zoysia japonica | 1 | nbis-gene-46764 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g16032, Zma_g24709 |