Basic Information
Locus ID:
Zma_g24708
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr15 | 902426 | 903184 | + | Zma_g24708 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.05 | 27,897.78 Da | 47.41 | 65.12 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 165 | 207 | 3.78036E-16 | - |
| Pfam | PF13639 | Ring finger domain | 164 | 207 | 8.2E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 151 | 211 | 1.7E-18 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 75 | 101 | 2.31E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 144 | 212 | 1.3E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 166 | 206 | 2.2E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 166 | 207 | 12.504031 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 100 | 120 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 211 | 235 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 100 | 128 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 215 | 235 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21960.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_039840491.1 | E3 ubiquitin-protein ligase RDUF1-like [Panicum virgatum] | 0 |
| Q8BP31 | RING finger protein 122 OS=Mus musculus OX=10090 GN=Rnf122 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2T7E4Z6 | RING-type domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_3G024000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Zoysia japonica | 1 | nbis-gene-39720 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g24708 |