Basic Information
Locus ID:
Zma_g24483
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr14 | 12620156 | 12624999 | + | Zma_g24483 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.56 | 29,140.40 Da | 57.14 | 54.04 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12420 | RRM_RBPMS_like | 173 | 255 | 8.35648E-34 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 175 | 245 | 2.7E-12 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 160 | 267 | 1.88E-14 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 169 | 259 | 3.0E-19 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 174 | 255 | 7.8E-7 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 173 | 259 | 12.13395 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 253 | 272 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76940.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_015650784.1 | RNA-binding protein 1 isoform X2 [Oryza sativa Japonica Group] | 0 |
| Q6JB11 | Protein MATERNALLY EXPRESSED GENE 5 OS=Zea mays OX=4577 GN=MEG5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8J5R7J8 | RRM domain-containing protein OS=Zizania palustris OX=103762 GN=GUJ93_ZPchr0008g11686 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology