Basic Information
Locus ID:
Zma_g24463
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
IBR domain, a half RING-finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr14 | 12470728 | 12476041 | + | Zma_g24463 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.91 | 68,293.69 Da | 54.44 | 60.43 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 293 | 341 | 7.3E-10 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 215 | 276 | 3.4E-14 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 142 | 224 | 1.03E-17 | - |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 570 | 598 | 2.22E-6 | IPR036443 |
| SUPERFAMILY | SSF57850 | RING/U-box | 215 | 283 | 5.47E-13 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 295 | 343 | 9.51E-18 | - |
| Gene3D | G3DSA:2.30.30.380 | - | 568 | 599 | 5.6E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 140 | 229 | 2.7E-17 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 272 | 535 | 2.1E-86 | - |
| SMART | SM00547 | zf_4 | 573 | 597 | 5.5E-4 | IPR001876 |
| SMART | SM00647 | ibrneu5 | 289 | 350 | 0.054 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 215 | 276 | 1.0E-19 | IPR002867 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 571 | 599 | 8.535414 | IPR001876 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 142 | 354 | 48.770714 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 146 | 192 | 9.258371 | IPR001841 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 575 | 594 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 541 | 570 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_025820234.1 | probable E3 ubiquitin-protein ligase ARI8 [Panicum hallii] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2S3I4E1 | RBR-type E3 ubiquitin transferase OS=Panicum hallii OX=206008 GN=PAHAL_6G288000 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology