Basic Information
Locus ID:
Zma_g24376
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr14 | 11947663 | 11951967 | + | Zma_g24376 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.83 | 48,028.98 Da | 46.67 | 69.03 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12354 | RRM3_TIA1_like | 276 | 350 | 3.58667E-32 | - |
| CDD | cd12619 | RRM2_PUB1 | 153 | 227 | 6.86613E-52 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 69 | 135 | 9.0E-13 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 154 | 224 | 1.5E-17 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 278 | 344 | 3.3E-13 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 65 | 232 | 5.57E-44 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 268 | 356 | 8.14E-23 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 6 | 151 | 2.2E-25 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 251 | 354 | 2.9E-23 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 152 | 249 | 1.1E-24 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 68 | 137 | 8.9E-17 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 277 | 346 | 3.5 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 153 | 226 | 1.6E-22 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 153 | 226 | 0.53 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 277 | 346 | 6.4E-17 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 67 | 141 | 15.374476 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 152 | 230 | 16.773018 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 276 | 350 | 16.090803 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 250 | 273 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_025820398.1 | oligouridylate-binding protein 1B-like [Panicum hallii] | 0 |
| Q6YZW2 | RNA-binding protein 208 OS=Oryza sativa subsp. japonica OX=39947 GN=RBP-208 PE=1 SV=1 | 0 | |
| TrEMBL | A0A835A262 | Oligouridylate-binding protein 1-like OS=Digitaria exilis OX=1010633 GN=HU200_065738 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology