Basic Information
Locus ID:
Zma_g24240
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr14 | 10888245 | 10895751 | - | Zma_g24240 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.70 | 107,667.34 Da | 55.33 | 68.60 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 443 | 745 | 1.85189E-129 | - |
| Pfam | PF01753 | MYND finger | 122 | 159 | 1.1E-9 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 442 | 744 | 1.9E-45 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 438 | 749 | 4.51E-85 | IPR038765 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 119 | 161 | 7.32E-12 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 435 | 758 | 3.6E-90 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 108 | 163 | 1.3E-11 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 442 | 747 | 52.305775 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 122 | 159 | 11.61131 | IPR002893 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 122 | 159 | - | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 443 | 458 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 93 | 113 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 764 | 794 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 93 | 109 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 810 | 851 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 944 | 977 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 816 | 851 | - | - |
| Coils | Coil | Coil | 43 | 63 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65450.1 | ubiquitin-specific protease 17. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_025820753.1 | ubiquitin carboxyl-terminal hydrolase 17 [Panicum hallii] | 0 |
| Q9FKP5 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Arabidopsis thaliana OX=3702 GN=UBP17 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9T2E2 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Eragrostis curvula OX=38414 GN=EJB05_48675 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology