Basic Information
Locus ID:
Zma_g24090
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
XPC-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr14 | 9503717 | 9508334 | + | Zma_g24090 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.35 | 39,213.10 Da | 50.19 | 84.35 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 3.77692E-29 | - |
| Pfam | PF09280 | XPC-binding domain | 237 | 293 | 6.2E-21 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 134 | 172 | 5.4E-12 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 4 | 76 | 1.5E-16 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 319 | 355 | 2.4E-10 | IPR015940 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 89 | 1.77E-21 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 119 | 178 | 6.04E-9 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 304 | 362 | 2.92E-13 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 234 | 299 | 3.27E-20 | IPR036353 |
| Gene3D | G3DSA:1.10.10.540 | - | 228 | 293 | 3.0E-22 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 127 | 177 | 9.3E-18 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 79 | 7.5E-24 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 313 | 359 | 1.8E-19 | - |
| SMART | SM00727 | CBM | 235 | 278 | 2.0E-7 | IPR006636 |
| SMART | SM00165 | uba_6 | 320 | 357 | 2.1E-7 | IPR015940 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 1.5E-18 | IPR000626 |
| SMART | SM00165 | uba_6 | 134 | 174 | 8.1E-5 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 363 | 7.6E-93 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 318 | 358 | 14.450564 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 135 | 175 | 11.510718 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 18.432085 | IPR000626 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 263 | 285 | 1.8E-28 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 314 | 330 | 1.8E-28 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 331 | 345 | 1.8E-28 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 346 | 361 | 1.8E-28 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 196 | 211 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 181 | 213 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38470.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_025821554.1 | probable ubiquitin receptor RAD23 isoform X1 [Panicum hallii] | 0 |
| Q40742 | Probable ubiquitin receptor RAD23 OS=Oryza sativa subsp. japonica OX=39947 GN=RAD23 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0A9MQQ5 | Ubiquitin receptor RAD23 OS=Arundo donax OX=35708 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology