HalophFGD

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Basic Information
Locus ID: Zma_g23606
Species & Taxonomic ID: Zoysia macrostachya & 121788
Genome Assembly: GCA_049640385.1
Description: Phloem protein 2
Maps and Mapping Data
Chromosome Start End Strand ID
Zma_chr14 932127 933532 + Zma_g23606
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
5.41 32,488.03 Da 60.44 71.85 -0.38
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF14299 Phloem protein 2 115 296 4.9E-31 IPR025886
Pfam PF00646 F-box domain 12 53 5.5E-5 IPR001810
SUPERFAMILY SSF81383 F-box domain 3 54 1.55E-10 IPR036047
Gene3D G3DSA:1.20.1280.50 - 1 70 8.9E-6 -
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
TAIR AT2G02230.1 phloem protein 2-B1. 0
RefSeq XP_025819896.1 F-box protein PP2-B11-like [Panicum hallii] 0
Swiss-Prot Q6NPT8 F-box protein PP2-B1 OS=Arabidopsis thaliana OX=3702 GN=PP2B1 PE=1 SV=1 0
TrEMBL A0A5J9W5X7 F-box domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_09818 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Poaceae Echinochloa crus-galli 7 AH01.1848, AH01.3671, BH01.4023, BH08.313, CH01.2257 ...
CH01.4294, CH08.390
Poaceae Eleusine coracana subsp. coracana 2 gene-QOZ80_8AG0617210, gene-QOZ80_8BG0644830
Poaceae Hordeum vulgare 3 HORVU.MOREX.r3.3HG0231520.1, HORVU.MOREX.r3.7HG0701150.1 ...
HORVU.MOREX.r3.7HG0714530.1
Poaceae Lolium multiflorum 2 gene-QYE76_032497, gene-QYE76_032531
Poaceae Oryza coarctata 2 Oco15G001980, Oco16G002040
Poaceae Oryza sativa 1 LOC_Os08g05480.1
Poaceae Paspalum vaginatum 3 gene-BS78_07G043700, gene-BS78_07G082500 ...
gene-BS78_07G082600
Poaceae Puccinellia tenuiflora 3 Pt_Chr0405591, Pt_Chr0405592, Pt_Chr0405593
Poaceae Sporobolus alterniflorus 7 Chr16G001100, Chr16G001190, Chr17G001130, Chr20G010660 ...
Chr20G010680, Chr29G011680, Chr29G011700
Poaceae Thinopyrum elongatum 3 Tel3E01G144300, Tel7E01G524700, Tel7E01G604000
Poaceae Triticum dicoccoides 5 gene_TRIDC3AG009440, gene_TRIDC3BG013290 ...
gene_TRIDC7AG042560, gene_TRIDC7AG051800, gene_TRIDC7BG033690
Poaceae Triticum aestivum 8 TraesCS3A02G079300.1, TraesCS3B02G094500.1 ...
TraesCS3D02G079700.1, TraesCS7A02G304800.1, TraesCS7A02G371000.1, TraesCS7B02G205100.1, TraesCS7D02G300300.1, TraesCS7D02G351500.1
Poaceae Zea mays 2 Zm00001eb046560_P001, Zm00001eb416330_P002
Poaceae Zoysia japonica 3 nbis-gene-41564, nbis-gene-41565, nbis-gene-41580
Poaceae Zoysia macrostachya 3 Zma_g23606, Zma_g23607, Zma_g23615
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.