Basic Information
Locus ID:
Zma_g23356
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
IBR domain, a half RING-finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr13 | 13102610 | 13109567 | + | Zma_g23356 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.00 | 63,149.63 Da | 52.66 | 62.04 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 254 | 302 | 1.3E-9 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 176 | 237 | 1.0E-13 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 177 | 244 | 2.47E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 103 | 185 | 1.5E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 256 | 304 | 1.23E-17 | - |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 526 | 553 | 8.63E-6 | IPR036443 |
| Gene3D | G3DSA:2.30.30.380 | - | 523 | 554 | 2.1E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 101 | 190 | 2.4E-16 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 233 | 495 | 1.1E-86 | - |
| SMART | SM00547 | zf_4 | 528 | 552 | 9.8E-4 | IPR001876 |
| SMART | SM00647 | ibrneu5 | 176 | 237 | 6.2E-20 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 250 | 311 | 0.04 | IPR002867 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 107 | 153 | 9.435407 | IPR001841 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 526 | 554 | 8.501537 | IPR001876 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 103 | 315 | 46.970718 | IPR044066 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 530 | 549 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 498 | 522 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_025820234.1 | probable E3 ubiquitin-protein ligase ARI8 [Panicum hallii] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A835FHX6 | RBR-type E3 ubiquitin transferase OS=Digitaria exilis OX=1010633 GN=HU200_010671 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology