Basic Information
Locus ID:
Zma_g23302
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr13 | 12751466 | 12752290 | - | Zma_g23302 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.79 | 27,725.94 Da | 61.10 | 80.44 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 226 | 263 | 2.25413E-8 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 224 | 269 | 4.0E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 225 | 270 | 9.82E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 205 | 274 | 6.7E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 226 | 263 | 1.9E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 226 | 264 | 11.353297 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 241 | 250 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 138 | 152 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 117 | 131 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 117 | 166 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22250.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_039854814.1 | predicted GPI-anchored protein 58 [Panicum virgatum] | 0 |
| TrEMBL | A0A835A6W1 | RING-type domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_061917 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology