Basic Information
Locus ID:
Zma_g23143
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr13 | 11637455 | 11645336 | - | Zma_g23143 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.20 | 109,074.21 Da | 52.16 | 68.86 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 440 | 742 | 2.54105E-132 | - |
| Pfam | PF01753 | MYND finger | 121 | 158 | 9.9E-10 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 439 | 741 | 3.1E-45 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 436 | 746 | 6.28E-85 | IPR038765 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 118 | 160 | 8.02E-12 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 108 | 161 | 9.6E-13 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 432 | 755 | 1.9E-91 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 439 | 744 | 52.69202 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 121 | 158 | 11.594026 | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 440 | 455 | - | IPR018200 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 121 | 158 | - | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 842 | 874 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 914 | 939 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 837 | 874 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 959 | 993 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 239 | 264 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 959 | 999 | - | - |
| Coils | Coil | Coil | 42 | 62 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65450.1 | ubiquitin-specific protease 17. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_025820753.1 | ubiquitin carboxyl-terminal hydrolase 17 [Panicum hallii] | 0 |
| Q9FKP5 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Arabidopsis thaliana OX=3702 GN=UBP17 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9T2E2 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Eragrostis curvula OX=38414 GN=EJB05_48675 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology