halophFGD

Basic Information

Locus ID: Zma_g22755

Species & Taxonomic ID: Zoysia macrostachya & 121788

Genome Assembly: GCA_049640385.1

Description: WD40 repeats

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Zma_chr13	3933172	3934226	-	Zma_g22755

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.20	12,930.46 Da	25.23	91.77	-0.07

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00400	WD domain, G-beta repeat	79	109	0.083	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	2	116	4.7E-17	IPR036322
Gene3D	G3DSA:2.130.10.10	-	1	111	9.5E-20	IPR015943

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K10599 (pre-mRNA-processing factor 19 [EC:2.3.2.27])

Pathway:

ko03040 (Spliceosome) map03040 (Spliceosome) ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G33340.1	MOS4-associated complex 3B. Encodes MAC3B, a U-box proteins with homology to the yeast and human E3 ubiquitin ligase Prp19. Associated with the MOS4-Associated Complex (MAC). Involved in plant innate immunity.
RefSeq	NP_001399916.1	pre-mRNA-splicing factor 19 [Zea mays]
Swiss-Prot	Q9AV81	Pre-mRNA-processing factor 19 OS=Oryza sativa subsp. japonica OX=39947 GN=PRP19 PE=2 SV=1
TrEMBL	A0A811NY54	Pre-mRNA-processing factor 19 OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS20653 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Apiaceae	Apium graveolens	1	Ag10G00349
Arecaceae	Phoenix dactylifera	3	gene-LOC120103761, gene-LOC120108767, gene-LOC120110273
Poaceae	Zoysia macrostachya	1	Zma_g22755