Basic Information
Locus ID:
Zma_g22416
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr13 | 685940 | 693494 | + | Zma_g22416 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.20 | 66,355.49 Da | 47.78 | 84.72 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 264 | 556 | 2.02696E-54 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 348 | 386 | 0.0048 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 519 | 556 | 5.0E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 310 | 344 | 0.0064 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 478 | 513 | 0.01 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 263 | 298 | 4.8E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 258 | 556 | 4.88E-68 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 256 | 521 | 4.9E-62 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 522 | 572 | 1.1E-11 | IPR015943 |
| SMART | SM00320 | WD40_4 | 388 | 428 | 410.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 305 | 344 | 5.8E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 472 | 514 | 1.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 517 | 557 | 2.0E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 347 | 386 | 0.0055 | IPR001680 |
| SMART | SM00320 | WD40_4 | 429 | 468 | 30.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 260 | 299 | 9.2E-9 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 267 | 301 | 10.891048 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 524 | 559 | 11.5765 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 524 | 566 | 14.384962 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 101 | 151 | 8.836172 | IPR006595 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 61 | 93 | 8.726626 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 267 | 308 | 13.582925 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 312 | 353 | 14.318126 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 312 | 349 | 11.049229 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 286 | 300 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 501 | 515 | 5.1E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 544 | 558 | 5.1E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 286 | 300 | 5.1E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_004972947.1 | WD repeat-containing protein 26 isoform X2 [Setaria italica] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | K3YGT1 | WD repeat-containing protein 26 OS=Setaria italica OX=4555 GN=101758974 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology