Basic Information
Locus ID:
Zma_g22231
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr12 | 15438391 | 15442963 | + | Zma_g22231 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.73 | 86,923.41 Da | 57.90 | 66.08 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 469 | 506 | 1.3E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 606 | 640 | 0.066 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 309 | 342 | 1.7E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 428 | 464 | 2.8E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 305 | 644 | 1.28E-53 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 268 | 368 | 3.8E-12 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 413 | 687 | 1.8E-46 | IPR015943 |
| SMART | SM00320 | WD40_4 | 559 | 599 | 54.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 467 | 506 | 2.6E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 426 | 464 | 5.9E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 508 | 547 | 7.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 747 | 792 | 170.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 304 | 343 | 1.8E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 600 | 641 | 0.15 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 473 | 508 | 10.469233 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 473 | 508 | 12.580379 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 311 | 352 | 14.752563 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 433 | 473 | 14.552052 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 311 | 348 | 11.81377 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 433 | 467 | 10.970139 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 451 | 465 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 330 | 344 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 493 | 507 | 1.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 451 | 465 | 1.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 330 | 344 | 1.3E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 681 | 759 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 89 | 159 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 74 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 685 | 714 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 253 | 274 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 249 | 287 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 100 | 132 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 734 | 759 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 211 | 233 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54200.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_004960064.1 | WD repeat-containing protein 44 [Setaria italica] | 0 |
| Q498F0 | WD repeat-containing protein 44 OS=Xenopus laevis OX=8355 GN=wdr44 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9TYX5 | WD_REPEATS_REGION domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_40185 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology