Basic Information
Locus ID:
Zma_g22016
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr12 | 14280802 | 14285750 | - | Zma_g22016 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.69 | 108,163.99 Da | 42.52 | 83.30 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 799 | 941 | 1.20098E-47 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 712 | 758 | 3.8E-7 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 344 | 534 | 3.6E-24 | IPR000330 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 574 | 674 | 2.1E-8 | IPR000330 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 833 | 931 | 2.1E-14 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 295 | 536 | 5.32E-19 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 608 | 988 | 1.32E-57 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 711 | 761 | 2.29E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 696 | 763 | 5.8E-12 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 303 | 392 | 3.0E-12 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 612 | 988 | 1.4E-63 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 454 | 544 | 2.8E-11 | IPR038718 |
| SMART | SM00487 | ultradead3 | 328 | 726 | 0.0037 | IPR014001 |
| SMART | SM00490 | helicmild6 | 848 | 931 | 2.0E-17 | IPR001650 |
| SMART | SM00184 | ring_2 | 713 | 751 | 1.5E-4 | IPR001841 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 824 | 984 | 13.969612 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 713 | 749 | 10.748424 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 728 | 737 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 532 | 577 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 249 | 286 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 535 | 554 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 249 | 270 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_025824278.1 | helicase-like transcription factor CHR28 [Panicum hallii] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2T7D0M0 | Helicase-like transcription factor CHR28 OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_7G294300 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology