Basic Information
Locus ID:
Zma_g2200
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr01 | 18651367 | 18657329 | - | Zma_g2200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.37 | 55,841.81 Da | 49.75 | 67.91 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 249 | 306 | 3.7E-5 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 459 | 495 | 3.0E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 329 | 365 | 3.6E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 370 | 410 | 0.0059 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 201 | 499 | 4.32E-62 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 192 | 500 | 4.4E-124 | IPR015943 |
| SMART | SM00320 | WD40_4 | 368 | 410 | 6.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 242 | 282 | 0.027 | IPR001680 |
| SMART | SM00320 | WD40_4 | 413 | 453 | 190.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 285 | 322 | 0.052 | IPR001680 |
| SMART | SM00320 | WD40_4 | 326 | 365 | 5.3E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 456 | 495 | 4.3E-9 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 463 | 496 | 12.446495 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 333 | 365 | 11.602863 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 463 | 496 | 15.086744 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 333 | 365 | 14.017362 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 250 | 291 | 9.472486 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 375 | 419 | 8.570195 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 482 | 496 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 65 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 64 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22910.1 | FIZZY-related 2. | 0 |
| RefSeq | XP_002468612.1 | protein FIZZY-RELATED 2 [Sorghum bicolor] | 0 |
| Q9M7I2 | B-type cell cycle switch protein ccs52A OS=Medicago truncatula OX=3880 GN=CCS52A PE=1 SV=1 | 0 | |
| TrEMBL | A0A811MLQ1 | ANAPC4_WD40 domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS5528 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology