Basic Information
Locus ID:
Zma_g21258
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr12 | 9147064 | 9148380 | - | Zma_g21258 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.61 | 47,014.79 Da | 42.07 | 96.64 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 15 | 57 | 7.64382E-20 | - |
| Pfam | PF04564 | U-box domain | 11 | 84 | 1.7E-16 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 115 | 400 | 8.38E-13 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 8 | 89 | 2.17E-25 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 112 | 413 | 8.8E-15 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 89 | 8.8E-25 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 14 | 80 | 5.6E-26 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 10 | 87 | 32.500866 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_034605215.1 | E3 ubiquitin-protein ligase PUB23-like [Setaria viridis] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1E5VH43 | RING-type E3 ubiquitin transferase OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0014531 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology