Basic Information
Locus ID:
Zma_g21172
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Short Name:
AFB3
Description:
F-box-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr12 | 8453946 | 8456410 | - | Zma_g21172 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.86 | 64,622.08 Da | 46.73 | 91.53 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 1 | 41 | 4.8E-16 | IPR041567 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 61 | 107 | 1.2E-23 | IPR041101 |
| SUPERFAMILY | SSF81383 | F-box domain | 1 | 37 | 2.88E-8 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 28 | 531 | 1.88E-37 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 41 | 575 | 5.1E-176 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 40 | 4.7E-18 | - |
| SMART | SM00367 | LRR_CC_2 | 99 | 123 | 130.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 366 | 390 | 6.1 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 124 | 149 | 46.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 333 | 365 | 690.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 178 | 204 | 500.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 426 | 449 | 110.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 475 | 500 | 130.0 | IPR006553 |
| SMART | SM00256 | fbox_2 | 4 | 45 | 0.006 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 309 | 332 | 78.0 | IPR006553 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26810.1 | auxin signaling F-box 2. | 0 |
| RefSeq | XP_025824574.1 | transport inhibitor response 1-like protein Os04g0395600 [Panicum hallii] | 0 |
| Q7XVM8 | Transport inhibitor response 1-like protein Os04g0395600 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0395600 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9TVC7 | F-box domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_38251 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology