Basic Information
Locus ID:
Zma_g21114
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
PPR repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr12 | 7673773 | 7676229 | + | Zma_g21114 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.34 | 85,257.27 Da | 30.60 | 94.02 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12854 | PPR repeat | 489 | 521 | 6.8E-7 | IPR002885 |
| Pfam | PF12854 | PPR repeat | 453 | 483 | 1.0E-7 | IPR002885 |
| Pfam | PF12854 | PPR repeat | 290 | 322 | 3.9E-8 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 117 | 143 | 0.029 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 633 | 679 | 6.2E-8 | IPR002885 |
| Pfam | PF12854 | PPR repeat | 524 | 555 | 6.7E-12 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 223 | 272 | 5.4E-18 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 562 | 611 | 2.3E-13 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 395 | 436 | 1.7E-8 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 328 | 376 | 6.5E-14 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 150 | 199 | 9.2E-10 | IPR002885 |
| SUPERFAMILY | SSF48452 | TPR-like | 390 | 659 | 8.34E-7 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 217 | 283 | 3.1E-23 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 507 | 625 | 1.6E-36 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 48 | 216 | 5.0E-27 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 626 | 760 | 6.4E-22 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 394 | 487 | 9.3E-22 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 284 | 393 | 6.8E-32 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 530 | 563 | 3.2E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 296 | 330 | 6.4E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 600 | 626 | 4.1E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 495 | 529 | 5.0E-9 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 636 | 669 | 2.3E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 261 | 294 | 1.9E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 670 | 704 | 6.1E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 395 | 423 | 1.4E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 565 | 598 | 2.6E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 427 | 459 | 1.3E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 152 | 186 | 5.9E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 118 | 150 | 1.8E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 331 | 364 | 1.7E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 226 | 260 | 4.2E-11 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 186 | 220 | 8.692369 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 598 | 632 | 9.96388 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 423 | 457 | 11.103854 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 329 | 363 | 12.452094 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 259 | 293 | 12.397287 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 150 | 185 | 12.254791 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 633 | 667 | 10.314641 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 388 | 422 | 9.591195 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 528 | 562 | 13.307076 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 294 | 328 | 12.868624 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 458 | 492 | 9.941957 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 493 | 527 | 11.597113 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 668 | 702 | 11.070971 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 224 | 258 | 12.364404 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 563 | 597 | 10.55579 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 115 | 149 | 8.911594 | IPR002885 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G10690.1 | pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing protein. | 0 |
| RefSeq | XP_044431973.1 | protein Rf1, mitochondrial-like [Triticum aestivum] | 0 |
| Q76C99 | Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=Rf1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9TR19 | PPR_long domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_37210 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology