Basic Information
Locus ID:
Zma_g2077
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
CHY zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr01 | 17875341 | 17877434 | - | Zma_g2077 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.42 | 30,164.26 Da | 52.77 | 53.63 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14599 | Zinc-ribbon | 196 | 254 | 3.1E-26 | IPR039512 |
| Pfam | PF13639 | Ring finger domain | 148 | 191 | 8.5E-7 | IPR001841 |
| Pfam | PF05495 | CHY zinc finger | 13 | 94 | 1.6E-17 | IPR008913 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 85 | 141 | 8.11E-19 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 147 | 193 | 1.8E-9 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 7 | 83 | 6.41E-16 | IPR037274 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 133 | 213 | 2.1E-10 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 220 | 261 | 3.3E-19 | - |
| SMART | SM00184 | ring_2 | 149 | 191 | 9.9E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 149 | 191 | 11.66311 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 6 | 82 | 24.391123 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 84 | 148 | 33.950233 | IPR017921 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22920.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_006649394.1 | E3 ubiquitin-protein ligase RZFP34-like [Oryza brachyantha] | 0 |
| Q9FFB6 | E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana OX=3702 GN=RZPF34 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0D9VPH8 | CHY-type domain-containing protein OS=Leersia perrieri OX=77586 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology