Basic Information
Locus ID:
Zma_g20288
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
Mechanosensitive ion channel
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr11 | 12526308 | 12530971 | + | Zma_g20288 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.00 | 56,797.65 Da | 44.96 | 92.74 | 0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00924 | Mechanosensitive ion channel | 319 | 521 | 9.9E-38 | IPR006685 |
| SUPERFAMILY | SSF82861 | Mechanosensitive channel protein MscS (YggB), transmembrane region | 273 | 360 | 1.44E-8 | IPR011014 |
| SUPERFAMILY | SSF50182 | Sm-like ribonucleoproteins | 361 | 427 | 1.34E-13 | IPR010920 |
| Gene3D | G3DSA:2.30.30.60 | - | 377 | 425 | 1.3E-11 | IPR023408 |
| Gene3D | G3DSA:1.10.287.1260 | - | 272 | 376 | 1.9E-15 | - |
Gene Ontology
Biological Process:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G00290.1 | Mechanosensitive ion channel protein. | 0 |
| RefSeq | XP_034603459.1 | mechanosensitive ion channel protein 1, mitochondrial-like isoform X1 [Setaria viridis] | 0 |
| Q8VZL4 | Mechanosensitive ion channel protein 1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MSL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U6TV86 | Mechanosensitive ion channel protein 1, mitochondrial OS=Setaria viridis OX=4556 GN=SEVIR_7G221000v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg13722, jg1948, jg6682, jg6803 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1685 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah022961 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g004200 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg4554, Sbi_jg49280 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5962 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000484 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl11036, Sgl16444 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015365, gene:ENSEOMG00000033132 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0003240, CQ.Regalona.r1.2BG0025240 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30055880, pistato.v30242870 |
| Apiaceae | Apium graveolens | 1 | Ag6G00193 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G007680 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103717359, gene-LOC120107065 |
| Asteraceae | Flaveria trinervia | 1 | Ftri5G11052 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G00234.1, AT4G00290.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028609m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g00340.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g042160.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0974 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G1002, Cgl02G1024 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g07650 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.831 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00001441 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G03559, Lb1G07413 |
| Poaceae | Echinochloa crus-galli | 6 | AH07.3004, AH09.2026, BH07.2829, BH09.2185, CH07.2909 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2BG0196560, gene-QOZ80_4AG0306570 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0186360.1, HORVU.MOREX.r3.7HG0715930.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_045752, gene-QYE76_045772 |
| Poaceae | Oryza coarctata | 4 | Oco03G018230, Oco04G018980, Oco07G013860, Oco08G013370 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g45690.1, LOC_Os04g48940.2 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G238700, gene-BS78_06G196200 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0307294, Pt_Chr0503701, Pt_Chr0703612 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr09G023470, Chr23G005920, Chr26G013680 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G679400 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG057290, gene_TRIDC2BG060130 ... |
| Poaceae | Triticum aestivum | 4 | TraesCS2A02G395900.1, TraesCS2B02G414200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb073200_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-22257, nbis-gene-22634 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g16881, Zma_g20288 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG19.947, evm.TU.LG24.949 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g02210 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.531 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21649 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-91 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-7343 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.251 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017544 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1749 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19619 |
| Salicaceae | Populus euphratica | 1 | populus_peu27659 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632659 |
| Solanaceae | Solanum chilense | 1 | SOLCI005830600 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002245, gene-LOC107002246 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_1408 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G2212 |
| Zosteraceae | Zostera marina | 1 | Zosma07g00380.v3.1 |