Basic Information
Locus ID:
Zma_g20222
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr11 | 12044701 | 12049093 | + | Zma_g20222 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.47 | 96,433.70 Da | 49.50 | 85.38 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 43 | 203 | 3.90706E-38 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 805 | 846 | 1.99754E-23 | - |
| Pfam | PF04564 | U-box domain | 801 | 869 | 2.9E-18 | IPR003613 |
| Pfam | PF00069 | Protein kinase domain | 518 | 745 | 1.5E-41 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 494 | 768 | 7.28E-67 | IPR011009 |
| SUPERFAMILY | SSF57850 | RING/U-box | 799 | 870 | 2.83E-23 | - |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 44 | 168 | 3.18E-6 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 586 | 789 | 7.6E-49 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 800 | 870 | 1.9E-28 | IPR013083 |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 32 | 168 | 2.9E-10 | IPR014729 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 492 | 585 | 7.0E-25 | - |
| SMART | SM00220 | serkin_6 | 513 | 774 | 2.0E-29 | IPR000719 |
| SMART | SM00504 | Ubox_2 | 804 | 867 | 7.1E-30 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 800 | 870 | 35.994919 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 513 | 780 | 35.396496 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 631 | 643 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 519 | 540 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 282 | 302 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 282 | 301 | - | - |
| Coils | Coil | Coil | 346 | 387 | - | - |
| Coils | Coil | Coil | 458 | 485 | - | - |
| Coils | Coil | Coil | 395 | 415 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_035821098.1 | U-box domain-containing protein 33 [Zea mays] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 0 | |
| TrEMBL | A0A811QGP8 | RING-type E3 ubiquitin transferase OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS43444 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology