Basic Information
Locus ID:
Zma_g20099
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
catalytic domain of ctd-like phosphatases
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr11 | 11327647 | 11334944 | + | Zma_g20099 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.24 | 105,404.55 Da | 50.02 | 79.06 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 254 | 361 | 3.8E-5 | IPR004274 |
| Pfam | PF00035 | Double-stranded RNA binding motif | 709 | 762 | 5.7E-5 | IPR014720 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 709 | 771 | 9.43E-10 | - |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 831 | 905 | 8.43E-12 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 131 | 386 | 3.83E-17 | IPR036412 |
| Gene3D | G3DSA:3.30.160.20 | - | 708 | 788 | 1.8E-6 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 130 | 391 | 1.2E-23 | IPR023214 |
| Gene3D | G3DSA:3.30.160.20 | - | 827 | 908 | 1.9E-7 | - |
| SMART | SM00577 | forpap2 | 197 | 372 | 1.5E-8 | IPR004274 |
| SMART | SM00358 | DRBM_3 | 707 | 771 | 6.1E-4 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 832 | 898 | 2.0E-8 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 136 | 388 | 14.101789 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 831 | 899 | 12.038208 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 735 | 772 | 9.999001 | IPR014720 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 541 | 565 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 528 | 589 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 914 | 937 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 914 | 947 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21670.1 | C-terminal domain phosphatase-like 1. encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. | 0 |
| RefSeq | XP_039774792.1 | RNA polymerase II C-terminal domain phosphatase-like 1 isoform X1 [Panicum virgatum] | 0 |
| Q5YDB6 | RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9TUM5 | protein-serine/threonine phosphatase OS=Eragrostis curvula OX=38414 GN=EJB05_38612 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology