Basic Information
Locus ID:
Zma_g19798
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr11 | 9501743 | 9502831 | + | Zma_g19798 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.88 | 38,790.48 Da | 66.54 | 73.18 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 120 | 163 | 1.31946E-18 | - |
| Pfam | PF13639 | Ring finger domain | 120 | 163 | 2.0E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 120 | 169 | 9.32E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 84 | 169 | 1.0E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 121 | 162 | 1.8E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 121 | 163 | 12.636808 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 171 | 223 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 334 | 348 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 326 | 362 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 171 | 198 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05200.1 | RING/U-box superfamily protein. Encodes a putative RING-H2 zinc finger protein ATL6 (ATL6). | 0 |
| RefSeq | XP_039773107.1 | E3 ubiquitin-protein ligase ATL6-like [Panicum virgatum] | 0 |
| Q8RXX9 | E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana OX=3702 GN=ATL6 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9TSH3 | RING-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_37799 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 6 | AH07.2289, AH09.1175, BH06.2110, BH09.1276, CH07.2181 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0315720, gene-QOZ80_4BG0346710 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0172140.1.CDS1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_013370, gene-QYE76_024068, gene-QYE76_044350 |
| Poaceae | Oryza coarctata | 4 | Oco03G013260, Oco04G013140, Oco07G007180, Oco08G007090 |
| Poaceae | Oryza sativa | 3 | LOC_Os02g36300.1, LOC_Os04g37730.1, LOC_Os12g10450.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G115100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0302550, Pt_Chr0504746 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr23G011920, Chr25G007850, Chr26G007610 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G559300 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG046230, gene_TRIDC2BG049170 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G318200.1.cds1, TraesCS2B02G336300.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb081330_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-18749, nbis-gene-27038, nbis-gene-37715 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g19798 |