Basic Information
Locus ID:
Zma_g19347
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
RNA recognition motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr11 | 3256576 | 3258366 | - | Zma_g19347 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.56 | 57,453.56 Da | 41.27 | 77.25 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 432 | 504 | 3.9E-8 | IPR000504 |
| SUPERFAMILY | SSF81383 | F-box domain | 5 | 48 | 4.84E-6 | IPR036047 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 425 | 508 | 1.17E-16 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 403 | 510 | 8.3E-17 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 431 | 506 | 9.2E-15 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 430 | 510 | 14.91398 | IPR000504 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24770.1 | 31-kDa RNA binding protein. Encodes a chloroplast RNA-binding protein. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase). Required for editing and stability of specific chloroplast mRNAs. | 0 |
| RefSeq | XP_034569764.1 | uncharacterized protein LOC117834253 [Setaria viridis] | 0 |
| P19683 | 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9US16 | RRM domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_28919 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology