Basic Information
Locus ID:
Zma_g19176
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr10 | 11379478 | 11397952 | - | Zma_g19176 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.00 | 81,043.99 Da | 40.02 | 90.97 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 281 | 417 | 1.85888E-69 | - |
| CDD | cd18015 | DEXHc_RecQ1 | 72 | 280 | 2.98235E-129 | - |
| Pfam | PF00570 | HRDC domain | 617 | 679 | 1.1E-5 | IPR002121 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 302 | 407 | 3.0E-15 | IPR001650 |
| Pfam | PF16124 | RecQ zinc-binding | 420 | 484 | 2.1E-5 | IPR032284 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 93 | 260 | 2.6E-18 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 129 | 424 | 9.77E-56 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 613 | 685 | 6.4E-12 | IPR044876 |
| Gene3D | G3DSA:1.10.10.10 | - | 490 | 595 | 8.4E-24 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 281 | 487 | 1.2E-59 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 46 | 280 | 1.7E-88 | IPR027417 |
| SMART | SM00490 | helicmild6 | 327 | 408 | 1.6E-25 | IPR001650 |
| SMART | SM00487 | ultradead3 | 86 | 289 | 2.5E-28 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 84 | 503 | 3.8E-153 | IPR004589 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 610 | 690 | 12.074242 | IPR002121 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 98 | 273 | 23.102745 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 298 | 451 | 19.247776 | IPR001650 |
| Coils | Coil | Coil | 29 | 49 | - | - |
| Coils | Coil | Coil | 613 | 633 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.1 | RECQ helicase L2. Encodes a (d)NTP-dependent 3'->5' DNA helicase. This protein can also disrupt D loop structures and may mediate branch migration of Holliday junctions when tested in vitro. The unwinding activity of the enzyme depends on the presence of divalent cations (Mg2+, Mn2+, or Ca2+, but not Zn2+).(d)NTPs are also required with ATP and dATP supporting the greatest amount of DNA unwinding in vitro. | 0 |
| RefSeq | NP_001168975.1 | uncharacterized protein LOC100382802 [Zea mays] | 0 |
| Q9FT73 | ATP-dependent DNA helicase Q-like 2 OS=Arabidopsis thaliana OX=3702 GN=RECQL2 PE=1 SV=1 | 0 | |
| TrEMBL | C0PAU0 | ATP-dependent DNA helicase OS=Zea mays OX=4577 GN=100382802 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology