Basic Information
Locus ID:
Zma_g19150
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
Type III restriction enzyme, res subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr10 | 11236355 | 11242599 | + | Zma_g19150 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.85 | 137,333.80 Da | 61.70 | 54.41 | -0.77 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 724 | 853 | 9.02945E-61 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 736 | 844 | 2.4E-32 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 529 | 699 | 1.1E-47 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 577 | 860 | 5.06E-74 | IPR027417 |
| SUPERFAMILY | SSF51045 | WW domain | 18 | 53 | 5.87E-7 | IPR036020 |
| Gene3D | G3DSA:3.40.50.300 | - | 716 | 887 | 1.8E-57 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 483 | 715 | 1.2E-86 | IPR027417 |
| SMART | SM00490 | helicmild6 | 764 | 844 | 1.0E-31 | IPR001650 |
| SMART | SM00456 | ww_5 | 22 | 53 | 1.9E-4 | IPR001202 |
| SMART | SM00487 | ultradead3 | 524 | 727 | 5.0E-66 | IPR014001 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 21 | 53 | 10.9944 | IPR001202 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 505 | 533 | 11.016736 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 739 | 883 | 24.869518 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 536 | 710 | 30.785948 | IPR014001 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 27 | 51 | - | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 656 | 664 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1166 | 1184 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 100 | 207 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 208 | 222 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1078 | 1130 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 55 | 69 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 307 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1145 | 1165 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1042 | 1213 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 223 | 307 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06480.1 | DEAD box RNA helicase family protein. | 0 |
| RefSeq | XP_039796994.1 | DEAD-box ATP-dependent RNA helicase 40-like isoform X2 [Panicum virgatum] | 0 |
| Q9SQV1 | DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana OX=3702 GN=RH40 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9UJ05 | DEAD-box ATP-dependent RNA helicase 40 (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_25823 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology