Basic Information
Locus ID:
Zma_g19061
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr10 | 10642627 | 10646785 | - | Zma_g19061 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.56 | 47,740.87 Da | 44.37 | 70.48 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12619 | RRM2_PUB1 | 160 | 234 | 1.39053E-47 | - |
| CDD | cd12354 | RRM3_TIA1_like | 278 | 352 | 1.98336E-34 | - |
| CDD | cd12352 | RRM1_TIA1_like | 76 | 146 | 2.48166E-35 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 280 | 346 | 1.3E-13 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 161 | 231 | 1.4E-19 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 76 | 142 | 8.1E-14 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 270 | 357 | 6.52E-23 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 152 | 242 | 2.28E-28 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 63 | 152 | 2.28E-23 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 255 | 356 | 3.3E-23 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 156 | 251 | 1.3E-27 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 155 | 9.4E-26 | IPR012677 |
| SMART | SM00361 | rrm2_1 | 279 | 348 | 1.4 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 279 | 348 | 1.2E-18 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 160 | 233 | 5.2E-24 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 75 | 144 | 3.6E-18 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 160 | 233 | 0.16 | IPR003954 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 74 | 148 | 15.749695 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 278 | 352 | 16.346634 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 159 | 237 | 18.018063 | IPR000504 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_039822338.1 | oligouridylate-binding protein 1-like [Panicum virgatum] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9UKX4 | Oligouridylate binding protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_26337 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology