Basic Information
Locus ID:
Zma_g18868
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
Polysaccharide lyase family 4, domain III
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr10 | 8399587 | 8403999 | - | Zma_g18868 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.06 | 78,911.15 Da | 27.20 | 79.27 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10316 | RGL4_M | 372 | 471 | 8.15847E-30 | IPR029413 |
| CDD | cd10317 | RGL4_C | 483 | 673 | 6.93996E-48 | - |
| CDD | cd10320 | RGL4_N | 63 | 334 | 1.39962E-60 | - |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 481 | 672 | 3.5E-47 | IPR029411 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 397 | 467 | 5.3E-20 | IPR029413 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 37 | 240 | 1.8E-63 | IPR010325 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 479 | 673 | 9.35E-39 | IPR008979 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 50 | 336 | 4.39E-7 | IPR011013 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 370 | 469 | 3.33E-8 | IPR013784 |
| Gene3D | G3DSA:2.70.98.10 | - | 43 | 335 | 9.7E-14 | IPR014718 |
| Gene3D | G3DSA:2.60.120.260 | - | 479 | 673 | 3.7E-15 | - |
| Gene3D | G3DSA:2.60.40.1120 | - | 369 | 468 | 5.9E-7 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09880.4 | - | 0 |
| RefSeq | XP_004979331.2 | uncharacterized protein LOC101766736 [Setaria italica] | 0 |
| TrEMBL | A0A368S7B9 | rhamnogalacturonan endolyase OS=Setaria italica OX=4555 GN=SETIT_8G129700v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology