Basic Information
Locus ID:
Zma_g18288
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
Thaumatin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr09 | 11698353 | 11698847 | + | Zma_g18288 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.75 | 18,295.49 Da | 84.73 | 71.83 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 92 | 135 | 8.6E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 82 | 141 | 2.35E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 75 | 142 | 9.8E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 93 | 134 | 2.7E-7 | IPR001841 |
| SMART | SM00744 | ringv_2 | 92 | 135 | 0.0066 | IPR011016 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 93 | 135 | 12.577796 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 43 | 68 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06490.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_051230641.1 | E3 ubiquitin-protein ligase Os04g0590900-like [Lolium perenne] | 0 |
| Q7XLY8 | E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0590900 PE=2 SV=2 | 0 | |
| TrEMBL | A0A835A4E9 | RING-type E3 ubiquitin transferase OS=Digitaria exilis OX=1010633 GN=HU200_065197 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Apiaceae | Apium graveolens | 1 | Ag10G00766 |
| Poaceae | Echinochloa crus-galli | 7 | AH04.1990, AH04.2286, AH06.708, BH04.2231, BH04.2361 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_9AG0693130, gene-QOZ80_9BG0718900 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.4HG0358530.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 6 | gene-QYE76_014638, gene-QYE76_051889, gene-QYE76_051890 ... |
| Poaceae | Oryza coarctata | 2 | Oco21G010090, Oco22G011410 |
| Poaceae | Oryza sativa | 2 | LOC_Os11g47690.1, LOC_Os11g47700.1 |
| Poaceae | Paspalum vaginatum | 13 | gene-BS78_03G351000, gene-BS78_05G282700, gene-BS78_K266700 ... |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0604105 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr16G003990, Chr17G003690 |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G221800, Tel4E01G222000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG028170, gene_TRIDC4BG022390 |
| Poaceae | Triticum aestivum | 7 | TraesCS4A02G174400.1.cds1, TraesCS4A02G174500.1.cds1 ... |
| Poaceae | Zea mays | 5 | Zm00001eb091480_P001, Zm00001eb164680_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-18460, nbis-gene-45969 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g18288, Zma_g18289, Zma_g19157 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.763 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9472 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-21882 |