Basic Information
Locus ID:
Zma_g18204
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr09 | 10742512 | 10747074 | - | Zma_g18204 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.64 | 46,865.37 Da | 39.56 | 67.08 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12352 | RRM1_TIA1_like | 68 | 138 | 3.44411E-35 | - |
| CDD | cd12354 | RRM3_TIA1_like | 270 | 344 | 7.03974E-34 | - |
| CDD | cd12619 | RRM2_PUB1 | 152 | 226 | 7.42402E-49 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 153 | 223 | 3.3E-19 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 68 | 134 | 4.3E-14 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 272 | 338 | 8.9E-14 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 65 | 229 | 6.25E-46 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 256 | 346 | 3.94E-23 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 149 | 8.9E-24 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 250 | 349 | 1.4E-24 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 150 | 249 | 1.6E-25 | IPR012677 |
| SMART | SM00361 | rrm2_1 | 152 | 225 | 0.28 | IPR003954 |
| SMART | SM00361 | rrm2_1 | 271 | 340 | 2.7 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 67 | 136 | 2.1E-18 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 152 | 225 | 1.3E-23 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 271 | 340 | 3.6E-19 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 66 | 140 | 15.732639 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 270 | 344 | 16.3978 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 151 | 229 | 17.932785 | IPR000504 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_039822338.1 | oligouridylate-binding protein 1-like [Panicum virgatum] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9UKX4 | Oligouridylate binding protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_26337 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology