Basic Information
Locus ID:
Zma_g18186
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr09 | 10645983 | 10647170 | + | Zma_g18186 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.05 | 41,458.82 Da | 55.45 | 76.23 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 213 | 255 | 9.03317E-20 | - |
| Pfam | PF13639 | Ring finger domain | 213 | 255 | 3.1E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 212 | 261 | 1.01E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 182 | 262 | 2.1E-20 | IPR013083 |
| SMART | SM01197 | FANCL_C_2 | 209 | 263 | 0.0046 | - |
| SMART | SM00184 | ring_2 | 213 | 254 | 1.3E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 213 | 255 | 13.020386 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 367 | 395 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 369 | 395 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 48 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G10380.1 | RING/U-box superfamily protein. Encodes a RING finger domain protein with E3 ligase activity that is localized to the lipid rafts of the plasma membrane. Expression is increased in response to fungal pathogen. May be involved in regulation of programmed cell death by facilitating degredation of regulation of PDC activators. | 0 |
| RefSeq | XP_025827593.1 | E3 ubiquitin-protein ligase RING1-like [Panicum hallii] | 0 |
| Q9LX93 | E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9SKI4 | RING-type E3 ubiquitin transferase (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_55210 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH04.1947, BH04.1964, CH04.2313 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0688760, gene-QOZ80_9BG0716390 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0546750.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_066048 |
| Poaceae | Oryza coarctata | 2 | Oco21G008410, Oco22G009640 |
| Poaceae | Oryza sativa | 1 | LOC_Os11g39640.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G207800 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr07G015180, Chr31G007630 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G126800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG006210, gene_TRIDC6BG008750 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G050800.1.cds1, TraesCS6B02G067200.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb115110_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-43137, nbis-gene-46115 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g18186, Zma_g19050 |