Basic Information
Locus ID:
Zma_g18171
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr09 | 10491364 | 10495889 | + | Zma_g18171 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.54 | 35,797.54 Da | 41.08 | 91.10 | 0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 31 | 79 | 1.15283E-15 | - |
| Pfam | PF12906 | RING-variant domain | 31 | 78 | 2.5E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 27 | 83 | 3.14E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 25 | 84 | 3.6E-17 | IPR013083 |
| SMART | SM00744 | ringv_2 | 30 | 79 | 3.9E-16 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 23 | 85 | 19.89674 | IPR011016 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G22120.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_004979655.1 | uncharacterized protein LOC101768225 [Setaria italica] | 0 |
| TrEMBL | K3ZJA6 | RING-CH-type domain-containing protein OS=Setaria italica OX=4555 GN=101768225 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology