Basic Information
Locus ID:
Zma_g17996
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Short Name:
AFB3
Description:
Leucine-rich repeats, outliers
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr09 | 8637824 | 8642386 | - | Zma_g17996 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.23 | 64,564.06 Da | 46.12 | 95.64 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 2 | 41 | 2.2E-17 | IPR041567 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 61 | 109 | 2.7E-17 | IPR041101 |
| SUPERFAMILY | SSF52047 | RNI-like | 21 | 540 | 3.53E-30 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 41 | 578 | 4.0E-160 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 40 | 1.9E-15 | - |
| SMART | SM00367 | LRR_CC_2 | 285 | 310 | 260.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 368 | 392 | 38.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 311 | 334 | 300.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 101 | 125 | 64.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 126 | 151 | 18.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 477 | 501 | 340.0 | IPR006553 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12820.1 | auxin signaling F-box 3. Auxin receptor involved in primary and lateral root growth inhibition in response to nitrate. Target of miR393. Induced by nitrate in primary roots. | 0 |
| RefSeq | XP_004979343.1 | transport inhibitor response 1-like protein Os11g0515500 [Setaria italica] | 0 |
| Q2R3K5 | Transport inhibitor response 1-like protein Os11g0515500 OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0515500 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0A9INN3 | F-box domain-containing protein OS=Arundo donax OX=35708 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology