Basic Information
Locus ID:
Zma_g17454
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr08 | 23826149 | 23831321 | + | Zma_g17454 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.23 | 85,541.52 Da | 64.27 | 66.24 | -0.91 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 703 | 743 | 1.17697E-20 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 701 | 748 | 4.3E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 703 | 749 | 1.77E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 690 | 754 | 1.9E-13 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 704 | 743 | 10.748424 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 149 | 196 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 569 | 590 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 213 | 248 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 442 | 486 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 321 | 342 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 31 | 69 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 322 | 341 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 248 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 149 | 177 | - | - |
| Coils | Coil | Coil | 76 | 96 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_004954453.1 | uncharacterized protein LOC101769254 isoform X2 [Setaria italica] | 0 |
| Q0MW30 | E3 ubiquitin-protein ligase NEURL1B OS=Mus musculus OX=10090 GN=Neurl1b PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9UWH3 | RING-type domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_19136 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology