Basic Information
Locus ID:
Zma_g17395
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr08 | 23534026 | 23541129 | - | Zma_g17395 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.49 | 86,397.57 Da | 42.11 | 68.98 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 506 | 791 | 1.2355E-62 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 553 | 584 | 1.5E-4 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 36 | 1.3E-6 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 592 | 627 | 0.0016 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 676 | 708 | 0.0031 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 772 | 791 | 0.26 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 504 | 791 | 2.56E-58 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 642 | 791 | 8.0E-27 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 468 | 641 | 2.5E-31 | IPR015943 |
| SMART | SM00320 | WD40_4 | 631 | 667 | 13.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 545 | 584 | 9.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 752 | 791 | 0.017 | IPR001680 |
| SMART | SM00320 | WD40_4 | 670 | 708 | 1.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 503 | 542 | 7.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 588 | 628 | 4.5E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 711 | 750 | 0.68 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 595 | 629 | 8.518333 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 677 | 717 | 9.138305 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 759 | 791 | 11.365591 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 552 | 584 | 10.179234 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 595 | 637 | 10.942887 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 8.871533 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 759 | 791 | 12.045688 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 552 | 584 | 12.212779 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 356 | 417 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 325 | 417 | - | - |
| Coils | Coil | Coil | 79 | 99 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_034577810.1 | transcriptional corepressor LEUNIG_HOMOLOG isoform X1 [Setaria viridis] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U6WH78 | LisH domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_1G368600v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology