Basic Information
Locus ID:
Zma_g17075
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr08 | 21247467 | 21247943 | + | Zma_g17075 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.09 | 16,820.28 Da | 44.10 | 101.71 | 0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 82 | 125 | 2.58663E-17 | - |
| Pfam | PF13639 | Ring finger domain | 82 | 125 | 2.5E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 82 | 131 | 1.09E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 45 | 130 | 7.3E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 83 | 124 | 1.7E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 83 | 125 | 12.238477 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 41 | 56 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 41 | 64 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42200.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_004953797.1 | E3 ubiquitin-protein ligase ATL23 [Setaria italica] | 0 |
| Q8L9W3 | E3 ubiquitin-protein ligase ATL23 OS=Arabidopsis thaliana OX=3702 GN=ATL23 PE=1 SV=2 | 0 | |
| TrEMBL | K3YW19 | RING-type E3 ubiquitin transferase OS=Setaria italica OX=4555 GN=101754633 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology