Basic Information
Locus ID:
Zma_g1683
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr01 | 15344996 | 15346336 | + | Zma_g1683 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.02 | 47,042.95 Da | 36.86 | 104.53 | 0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 32 | 73 | 1.63461E-23 | - |
| Pfam | PF04564 | U-box domain | 28 | 99 | 3.2E-22 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 23 | 102 | 5.1E-30 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 141 | 423 | 7.49E-12 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 128 | 426 | 1.4E-11 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 27 | 100 | 7.9E-31 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 31 | 94 | 1.5E-33 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 27 | 101 | 40.23201 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_025796237.1 | U-box domain-containing protein 21-like [Panicum hallii] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3L6TJU2 | RING-type E3 ubiquitin transferase OS=Panicum miliaceum OX=4540 GN=C2845_PM01G08820 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology