Basic Information
Locus ID:
Zma_g16614
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
Ubiquitin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr08 | 18052816 | 18054006 | + | Zma_g16614 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.65 | 17,884.60 Da | 46.60 | 81.51 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00240 | Ubiquitin family | 74 | 130 | 1.0E-8 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 59 | 133 | 5.07E-14 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 62 | 132 | 1.7E-18 | - |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 63 | 131 | 12.552728 | IPR000626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 32 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 13 | 28 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G14360.1 | Ubiquitin-like superfamily protein. | 0 |
| RefSeq | XP_004952990.1 | BAG family molecular chaperone regulator 1 [Setaria italica] | 0 |
| Q8RX71 | BAG family molecular chaperone regulator 4 OS=Arabidopsis thaliana OX=3702 GN=BAG4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9V078 | Ubiquitin-like domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_20978 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg30449, jg40415 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17465 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30023620 |
| Apiaceae | Apium graveolens | 1 | Ag4G00734 |
| Arecaceae | Cocos nucifera | 3 | COCNU_02G013260, COCNU_08G003590, scaffold015715G000030 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103714456 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.588.V1.1, AsparagusV1_09.1237.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri13G19957, Ftri17G04649, Ftri18G33550 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT5G14360.1, AT5G40630.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10014879m.g.v1.0, Thhalv10028263m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp6g29670.v2.2, Sp7g01240.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB01g025900.2N, BniB02g048310.2N, BniB05g024170.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1930 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2005 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno15g06950 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g02460 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-6874 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.228 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00024209 |
| Plumbaginaceae | Limonium bicolor | 5 | Lb0G37127, Lb0G37930, Lb6G31803, Lb7G33113, Lb7G35325 |
| Poaceae | Echinochloa crus-galli | 12 | AH02.4234, AH07.2476, AH09.1346, AH09.1347, BH02.4263 ... |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_1AG0043600, gene-QOZ80_1BG0093620 ... |
| Poaceae | Hordeum vulgare | 6 | HORVU.MOREX.r3.2HG0176420.1, HORVU.MOREX.r3.2HG0176440.1 ... |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_018931, gene-QYE76_044738, gene-QYE76_044740 ... |
| Poaceae | Oryza coarctata | 5 | Oco01G027750, Oco02G028830, Oco03G014430, Oco04G014790 ... |
| Poaceae | Oryza sativa | 4 | LOC_Os01g67950.1, LOC_Os02g38410.1, LOC_Os04g40680.2 ... |
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_03G372900, gene-BS78_04G184900 ... |
| Poaceae | Puccinellia tenuiflora | 7 | Pt_Chr0204460, Pt_Chr0307152, Pt_Chr0307239, Pt_Chr0600337 ... |
| Poaceae | Sporobolus alterniflorus | 10 | Chr05G031230, Chr06G007690, Chr08G019780, Chr09G012480 ... |
| Poaceae | Thinopyrum elongatum | 5 | Tel2E01G593600, Tel2E01G593900, Tel3E01G618400 ... |
| Poaceae | Triticum dicoccoides | 13 | gene_TRIDC2AG049610, gene_TRIDC2AG049620 ... |
| Poaceae | Triticum aestivum | 24 | TraesCS2A02G321700.1, TraesCS2A02G321800.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb079320_P002, Zm00001eb183910_P002 ... |
| Poaceae | Zoysia japonica | 6 | nbis-gene-11069, nbis-gene-18632, nbis-gene-28429 ... |
| Poaceae | Zoysia macrostachya | 6 | Zma_g11757, Zma_g13822, Zma_g16614, Zma_g19933, Zma_g21486 ... |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG01.1204, evm.TU.LG06.989, evm.TU.LG14.526 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g01550 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-14872 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-588 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-58 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.45 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00006927 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11933 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-17531 |
| Salicaceae | Populus euphratica | 1 | populus_peu01147 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132622711, gene-LOC132623940 |
| Solanaceae | Solanum chilense | 1 | SOLCI002192200 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107010390, gene-LOC107010431 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_13571 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3534 |