Basic Information
Locus ID:
Zma_g16495
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
E3 ubiquitin-protein ligase EL5
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr08 | 17292297 | 17293139 | - | Zma_g16495 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.44 | 29,055.53 Da | 58.62 | 78.86 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 112 | 155 | 3.82368E-17 | - |
| Pfam | PF13639 | Ring finger domain | 112 | 155 | 7.5E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 108 | 168 | 7.57E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 89 | 162 | 1.5E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 113 | 154 | 2.8E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 113 | 155 | 12.961374 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62690.1 | AtL5. Encodes a RING-H2 zinc finger protein related to ATL2. The ATL gene family is represented by fifteen sequences that contain, in addition to the RING, a transmembrane domain which is located in most of them towards the N-terminal end. | 0 |
| RefSeq | XP_008678705.1 | E3 ubiquitin-protein ligase EL5 [Zea mays] | 0 |
| Q9LRB7 | E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5.1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9V2U4 | RING-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_21247 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology