Basic Information
Locus ID:
Zma_g16337
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
Nuclear transport factor 2 (NTF2) domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr08 | 16169329 | 16173021 | - | Zma_g16337 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.28 | 51,485.47 Da | 61.93 | 63.64 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00780 | NTF2 | 18 | 141 | 9.66764E-43 | IPR018222 |
| Pfam | PF02136 | Nuclear transport factor 2 (NTF2) domain | 22 | 140 | 4.6E-29 | IPR002075 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 315 | 373 | 1.6E-10 | IPR000504 |
| SUPERFAMILY | SSF54427 | NTF2-like | 18 | 141 | 3.02E-35 | IPR032710 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 294 | 402 | 7.12E-18 | IPR035979 |
| Gene3D | G3DSA:3.10.450.50 | - | 13 | 144 | 7.3E-38 | - |
| Gene3D | G3DSA:3.30.70.330 | - | 273 | 408 | 1.1E-15 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 314 | 386 | 4.0E-12 | IPR000504 |
| ProSiteProfiles | PS50177 | Nuclear transport factor 2 domain profile. | 22 | 140 | 30.374029 | IPR018222 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 313 | 390 | 11.809897 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 172 | 221 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 270 | 294 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 200 | 221 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 270 | 307 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 389 | 425 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60980.2 | Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain. | 0 |
| RefSeq | NP_001136675.1 | RNA-binding protein-like protein [Zea mays] | 0 |
| Q9FME2 | Nuclear transport factor 2 OS=Arabidopsis thaliana OX=3702 GN=NTF2 PE=1 SV=1 | 0 | |
| TrEMBL | B4FJT7 | Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain OS=Zea mays OX=4577 GN=100216804 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology