Basic Information
Locus ID:
Zma_g16310
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
Vacuolar protein sorting-associated protein 62
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr08 | 15868968 | 15912860 | - | Zma_g16310 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.16 | 472,440.78 Da | 46.91 | 89.44 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 2615 | 2719 | 2.05975E-6 | - |
| CDD | cd00821 | PH | 847 | 932 | 5.20674E-4 | - |
| Pfam | PF16909 | Vacuolar-sorting-associated 13 protein C-terminal | 3802 | 3937 | 7.7E-9 | IPR031645 |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3238 | 3552 | 5.9E-15 | IPR009543 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 578 | 798 | 2.4E-31 | IPR031642 |
| Pfam | PF00168 | C2 domain | 2667 | 2721 | 4.3E-5 | IPR000008 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 142 | 382 | 1.8E-63 | IPR031646 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2277 | 2363 | 2.4E-9 | IPR009291 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 114 | 9.2E-32 | IPR026854 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 1977 | 2125 | 5.6E-11 | IPR009291 |
| SUPERFAMILY | SSF50729 | PH domain-like | 845 | 941 | 1.26E-5 | - |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 2611 | 2720 | 6.36E-6 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 2583 | 2738 | 2.0E-6 | IPR035892 |
| SMART | SM00233 | PH_update | 795 | 939 | 6.6E-5 | IPR001849 |
| SMART | SM00694 | dysfc | 2949 | 2988 | 0.0083 | IPR006614 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 2594 | 2733 | 9.519777 | IPR000008 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2186 | 2200 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2186 | 2206 | - | - |
| Coils | Coil | Coil | 2566 | 2586 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48090.4 | - | 0 |
| RefSeq | XP_034588860.1 | uncharacterized protein LOC117851161 isoform X1 [Setaria viridis] | 0 |
| Q8BX70 | Intermembrane lipid transfer protein VPS13C OS=Mus musculus OX=10090 GN=Vps13c PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9V3J0 | C2 domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_21700 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology