Basic Information
Locus ID:
Zma_g16186
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
Ubiquitin homologues
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr08 | 14984137 | 14987237 | + | Zma_g16186 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.60 | 38,830.32 Da | 39.41 | 90.79 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 169 | 240 | 3.27667E-6 | - |
| CDD | cd17039 | Ubl_ubiquitin_like | 100 | 160 | 2.16611E-14 | - |
| Pfam | PF00240 | Ubiquitin family | 246 | 316 | 2.7E-12 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 20 | 86 | 9.5E-14 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 100 | 161 | 2.0E-14 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 11 | 86 | 7.61E-16 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 88 | 161 | 6.5E-18 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 164 | 242 | 2.75E-10 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 242 | 317 | 1.3E-15 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 166 | 239 | 5.9E-9 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 88 | 164 | 1.8E-19 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 18 | 87 | 4.9E-17 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 240 | 334 | 1.5E-15 | - |
| SMART | SM00213 | ubq_7 | 90 | 162 | 3.5E-9 | IPR000626 |
| SMART | SM00213 | ubq_7 | 243 | 314 | 1.7E-4 | IPR000626 |
| SMART | SM00213 | ubq_7 | 167 | 242 | 0.25 | IPR000626 |
| SMART | SM00213 | ubq_7 | 18 | 87 | 3.4E-11 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 167 | 242 | 9.286418 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 90 | 161 | 18.17078 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 243 | 318 | 13.902802 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 18 | 87 | 16.450523 | IPR000626 |
| PRINTS | PR00348 | Ubiquitin signature | 26 | 46 | 4.4E-10 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 68 | 89 | 4.4E-10 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 47 | 67 | 4.4E-10 | IPR019956 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 323 | 342 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G02890.3 | Ubiquitin family protein. Polyubiquitin gene containing 4 ubiquitin repeats. | 0 |
| RefSeq | XP_025798348.1 | polyubiquitin-like [Panicum hallii] | 0 |
| P0CG74 | Polyubiquitin OS=Candida albicans OX=5476 GN=UBI4 PE=3 SV=1 | 0 | |
| TrEMBL | A0A0A8ZN82 | Polyubiquitin-like OS=Arundo donax OX=35708 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 5 | AH01.1773, BH01.2094, CH01.2025, CH01.2026, CH01.2027 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0127800, gene-QOZ80_2BG0183260 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0042620.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_017527, gene-QYE76_067660 |
| Poaceae | Oryza coarctata | 2 | Oco19G005960, Oco20G005870 |
| Poaceae | Oryza sativa | 2 | LOC_Os10g33620.1, LOC_Os11g18670.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G206400 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G011030, Chr13G014190 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC1BG028140 |
| Poaceae | Triticum aestivum | 2 | TraesCS1B02G171700.1, TraesCS1D02G151600.1 |
| Poaceae | Zea mays | 1 | Zm00001eb045950_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-19226 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g16186 |